Staden 2.0.0b11 freeware

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows. ...

Author Rodger Staden
Released 2016-04-25
Filesize 20.10 MB
Downloads 939
OS Windows 2000, Windows 2003, Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Linux, Mac OS X
Installation Instal And Uninstall
Keywords DNA, Gap4, Gap5, Spin, trev, ancillary tools, Staden Package
Users' rating
(20 rating)
StadenScienceWindows 2000, Windows 2003, Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Linux, Mac OS X
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Staden freeware - The Latest User Reviews
Staden freeware - The Latest Versions History
2.0.0b11 Apr 25, 2016 New Release
2.0.0b9 Dec 5, 2011 New Release
2.0.0b8 Feb 10, 2011 New Release * Various fixes to compilation: parallel makes, improved DESTDIR
support.
* Big tidy up on the cache refence counting system, fixing
multiple sporadic crashes and rarely even data corruptions.
* Fixes to consensus caching sometimes storing corrupted data.
* More robust when we run out of disc space.
* Import GFF should be more robust. This now also supports
"colour=<0-17>" tags to match those used in Artemis.
* The insert size in the Libraries panel is now displayed
correctly (when filled out) instead of at 1/100th of the size.
* Reduced excessive memory usage of tg_index -t on large data
sets. Also fixed a few memory leaks and reference count leaks
(appear like memory leaks).
* SAM export now works correctly when auxillary fields or
read-group data is present.
* Removed a small memory corruption when shutting down
plots. This sometimes caused crashes when quitting the contig
editor.
* Fixed occasional crash when joining contigs.
* Editor searching crash fixes.

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... than joining all together. * Check Assembly text results are now more verbose, for easier comparison ... This uses the @RG "PL"atform heading in BAM files. The List Libraries window permits editing of this ...