Navigation: 

PyCogent 1.5.3 freeware

freeware screenshot
View Image

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. ...

Author PyCogent Team
Released 2012-11-09
Filesize 3.20 MB
Downloads 300
OS Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64
Installation Instal And Uninstall
Keywords analyze genome, sequence analyzer, analyze sequence, sequence, genome, gene
Users' rating
(9 rating)
PyCogentCADWindows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64
Add to saved freeware Report spyware
PyCogent - methods Freeware Download Notice

PyCogent Free Download - we do not host any PyCogent torrent files or links of PyCogent on rapidshare.com, depositfiles.com, megaupload.com etc. All PyCogent download links are direct PyCogent download from publisher site or their selected mirrors.

PyCogent freeware - The Latest User Reviews
PyCogent freeware - The Latest Versions History
1.5.3 Nov 9, 2012 New Release New Features:
· Added a withoutLostSpans() method to Feature objects in cogent.core.annotation. Useful after projecting features from one aligned sequence across to another. Implemented for ordinary Features and SimpleVariables but not xxy_list Variables.

Changes:
· Make Span.remapWith() a little clearer in cogent.core.location.
· Tidy annotation remapping code in cogent.core.annotation and cogent.core.sequence so that new positions are only calculated once when slicing, projecting, or otherwise remapping parts of sequences. The old code was needlessly doing it twice.

Bug Fixes:
· Fixed bug in BLAT application controller (cogent.app.blat) which would drop some input sequences when running assign_dna_reads_to_protein_database.
· Prevent negative widths from arising in cogent.draw.compatibility when alignment is too wide.

Most popular CAD freeware downloads

SCaVis

2.3 freeware download

... packages. More than 10 thousand JAVA classes and methods are packed in 50 MB library pack (this ... main numerical package) has about 2000 classes and methods. The rest are third-party JAVA or Python libraries. ...

5 freeware award

Geneious Basic x64

6.0.4 freeware download

... Basic pairwise alignment, multiple alignment and tree building methods including bootstrapping and consensus trees. Import and Export: · Import and export Newick, Nexus, FASTA ...

GelAnalyzer

23.1.1 freeware download

... accuracy of gel evaluation, such as background subtraction methods and Rf calibration. FERATURES: · Improved automatic lane detection · Automatic band detection · ...

OpenBabelGUI

2.4.1 freeware download

... and search molecular files using SMARTS and other methods Supports molecular modeling, cheminformatics, bioinformatics Organic chemistry, inorganic chemistry, solid-state materials, nuclear chemistry ...

Gwyddion

2.66 freeware download

... remove, outlier marking, scar marking, several line correction methods (median, modus) · removal of data under arbitrary mask using Laplace or fractal interpolation · automatic ...

Gwyddion for Linux

2.66 freeware download

... remove, outlier marking, scar marking, several line correction methods (median, modus) · removal of data under arbitrary mask using Laplace or fractal interpolation · automatic ...

Open3DALIGN

2.28 freeware download

... consisting in the combination of the latter two methods. High computational performance is attained splitting the computational tasks over several threads, according to the number ...

VEGA ZZ

3.2.3.28 freeware download

... residue name, residue number). Enhanced atom coloring methods: atom, residue, chain, segment, molecule, constraints and custom. Atom selection & picking. 3D surface: ...

TNTatlas

2024 B20240606 freeware download

... publishing an economical alternative to bulky paper publication methods. With TNTatlas, you can publish on the Internet and take advantage of the growing world-wide ...

PAST

4.03 freeware download

... The statistics section includes univariate and multivariate analysis methods such as variance analysis, intraclass correlation or canonical correspondence. Moreover, the app is able to use ...