VarScan 2.4.6 freeware

The advent of massively parallel sequencing technologies has fundamentally changed the study of genetics. New platforms like the Illumina GAIIx and the Roche GS yield unprecedented levels of sequencing throughput. The analysis and interpretation of data from next-generation sequencing platforms presents a substantial informatics challenge. ...

Author Dan Koboldt
Released 2023-03-28
Filesize 123 kB
Downloads 622
OS Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11, Linux, Mac OS X
Installation Instal And Uninstall
Keywords SNP identifier, identify SNP, filter variant, identify, identifier, SNP
Users' rating
(9 rating)
VarScanCADWindows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Windows 11, Linux, Mac OS X
VarScan - filter Freeware Download Notice

VarScan Free Download - we do not host any VarScan torrent files or links of VarScan on rapidshare.com, depositfiles.com, megaupload.com etc. All VarScan download links are direct VarScan download from publisher site or their selected mirrors.

VarScan freeware - The Latest User Reviews
VarScan freeware - The Latest Versions History
2.4.6 Mar 28, 2023 New Release
2.3.8 May 13, 2015 New Release VarScan v2.3.8 now incorporates false-positive filtering! This works for single-sample variant calls
or somatic/LOH/germline calls from the somatic command. Both native VarScan output format and VCF
format variant files are supported. SNVs and indels are both supported.
This new command replaces the functionality of the fpfilter.pl accessory script.
2.3.7 Jul 22, 2014 New Release Fixed the issue of zero-depth lines in single-sample pileups for VarScan copynumber
Fixed a similar issue causing inconsistent column output for multi-sample mpileups in VarScan mpileup2*
Multi-sample VCFs generated with VarScan v2.3.6 and earlier might be missing sample columns.

Most popular CAD freeware downloads

OpenBabelGUI

2.4.1 freeware download

... write and convert over 90 chemical file formats Filter and search molecular files using SMARTS and other methods Supports molecular modeling, cheminformatics, bioinformatics Organic chemistry, ...

Fourier Transform Lab Student Edition

1.2 freeware download

... images in the frequency domain for certain band filters etc. FEATURES: Forward & Inverse Fourier Transform Low-Pass Filter High-Pass Filter Custom-Mask Filter (for removing Fourier peaks) ...

Gwyddion

2.66 freeware download

... measuring distances in profile graph, profile export · filtering: mean, median, conservative denoise, Kuwahara, minimum, maximum, checker pattern removal · general convolution filter with user-defined kernel · statistical functions: Ra, RMS, ...

Gwyddion for Linux

2.66 freeware download

... measuring distances in profile graph, profile export · filtering: mean, median, conservative denoise, Kuwahara, minimum, maximum, checker pattern removal · general convolution filter with user-defined kernel · statistical functions: Ra, RMS, ...

Gephi for Linux

0.10.1 freeware download

... 500K edges · Iterate through visualization using dynamic filtering · Rich tools for meaningful graph manipulation ... Dynamic structures, such as social networks can be filtered with the timeline component. · Import temporal graph ...

Gephi for Mac OS X

0.10.1 freeware download

... 500K edges · Iterate through visualization using dynamic filtering · Rich tools for meaningful graph manipulation ... Dynamic structures, such as social networks can be filtered with the timeline component. · Import temporal graph ...

VarScan

2.4.6 freeware download

... data for a single sample, VarScan identifies and filters germline variants based on read counts, base quality, ... SNPs and Indels from SAMtools pileup files · Filters variants by coverage, read depth, variant frequency, and ...

sRNA Workbench

4.5.1 freeware download

... sequence data and outputs data to FASTA format. Filter: produces a filtered version of an sRNA dataset, controlled by several ...

primesieve x64

12.3 freeware download

primesieve x64 uses the segmented sieve of Eratosthenes with wheel factorization, this algorithm has a complexity of operations and uses space. Segmentation is currently the ...